5BO9 Transferase date May 27, 2015
title Structure Of Human Sialyltransferase St8siaiii In Complex Wi 3fneu5ac And Sia-6s-Lacnac
authors G.Volkers, L.Worrall, N.C.J.Strynadka
compound source
Molecule: Sia-Alpha-2,3-Gal-Beta-1,4-Glcnac-R:Alpha 2,8- Sialyltransferase;
Chain: A, B
Fragment: Unp Residues 81-380
Synonym: Alpha-2,8-Sialyltransferase 8c,8-Sialyltransferase Alpha-N-Acetyl-Neuraminide Alpha-2,8-Sialyltransferase 3, Sialyltransferase 8c,Siat8-C,Sialyltransferase St8sia III,S
Ec: 2.4.99.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: St8sia3, Siat8c
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Pfboh
Expression_system_plasmid: Pfhmsp Lic N
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.350 94.874 126.459 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CSF, FUC, GAL, NAG, NGS, SIA enzyme Transferase E.C.2.4.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of human ST8SiaIII sialyltransferase provides insight into cell-surface polysialylation., Volkers G, Worrall LJ, Kwan DH, Yu CC, Baumann L, Lameignere E, Wasney GA, Scott NE, Wakarchuk W, Foster LJ, Withers SG, Strynadka NC, Nat Struct Mol Biol. 2015 Jul 20. doi: 10.1038/nsmb.3060. PMID:26192331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (5bo9.pdb1.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 5BO9
  • CSU: Contacts of Structural Units for 5BO9
  • Structure Factors (1828 Kb)
  • Retrieve 5BO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BO9 from S2C, [Save to disk]
  • Re-refined 5bo9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BO9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bo9] [5bo9_A] [5bo9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BO9
  • Community annotation for 5BO9 at PDBWiki (http://pdbwiki.org)

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