5BPW Cell Cycle date May 28, 2015
title Atomic-Resolution Structures Of The Apcc Subunits Apc4 And N-Terminal Domain
authors K.Kulkarni, J.Yang, Z.Zhang, D.Barford
compound source
Molecule: Anaphase-Promoting Complex Subunit 4
Chain: A
Synonym: Apc4,Cyclosome Subunit 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc4, Apc4
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 4 21 2
R_factor 0.220 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.181 139.181 156.106 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic-Resolution Structures of the APC/C Subunits Apc4 and the Apc5 N-Terminal Domain., Cronin NB, Yang J, Zhang Z, Kulkarni K, Chang L, Yamano H, Barford D, J Mol Biol. 2015 Oct 9;427(20):3300-15. doi: 10.1016/j.jmb.2015.08.023. Epub 2015, Sep 4. PMID:26343760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (5bpw.pdb1.gz) 220 Kb
  • CSU: Contacts of Structural Units for 5BPW
  • Structure Factors (376 Kb)
  • Retrieve 5BPW in mmCIF format [Save to disk]
  • Re-refined 5bpw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BPW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BPW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bpw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bpw_A] [5bpw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BPW
  • Community annotation for 5BPW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science