5BQ8	Signaling Protein	date	May 28, 2015
title	Crystal Structure Of Norrin, A Wnt Signalling Activator, Cry II
authors	T.H.Chang, F.L.Hsieh, K.Harlos, E.Y.Jones
compound		source
Molecule: Norrin Chain: A, C Fragment: Unp Residues 25-133 Synonym: Norrie Disease Protein,X-Linked Exudative Vitreore Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ndp, Evr2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_plasmid: Plasmid
Molecule: Norrin Chain: B Fragment: Unp Residues 25-133 Synonym: Norrie Disease Protein,X-Linked Exudative Vitreore Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ndp, Evr2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_plasmid: Plasmid
Molecule: Norrin Chain: D Fragment: Unp Residues 25-133 Synonym: Norrie Disease Protein,X-Linked Exudative Vitreore Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ndp, Evr2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_plasmid: Plasmid
symmetry	Space Group: P 21 21 2	R_factor 0.233 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.667 53.059 96.128 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CL, MLY, PEG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan., Chang TH, Hsieh FL, Zebisch M, Harlos K, Elegheert J, Jones EY, Elife. 2015 Jul 9;4. doi: 10.7554/eLife.06554. PMID:26158506

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (5bq8.pdb1.gz) 35 Kb Biological Unit Coordinates (5bq8.pdb2.gz) 35 Kb LPC: Ligand-Protein Contacts for 5BQ8 CSU: Contacts of Structural Units for 5BQ8 Structure Factors (1808 Kb) Retrieve 5BQ8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BQ8 from S2C, [Save to disk] Re-refined 5bq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BQ8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BQ8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bq8_A] [5bq8_C] [5bq8_B] [5bq8_D] [5bq8] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5BQ8: [CT ] by SMART

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