5BQE	Signaling Protein	date	May 28, 2015
title	Crystal Structure Of Norrin In Complex With The Cysteine-Ric Of Frizzled 4 -Methylated Form
authors	T.H.Chang, F.L.Hsieh, K.Harlos, E.Y.Jones
compound		source
Molecule: Norrin Chain: A Fragment: Residues 25-133 Synonym: Norrie Disease Protein,X-Linked Exudative Vitreore Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ndp, Evr2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phligk-Str-8h-Sumo-1d4
Molecule: Norrin Chain: B Fragment: Residues 25-133 Synonym: Norrie Disease Protein,X-Linked Exudative Vitreore Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ndp, Evr2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phligk-Str-8h-Sumo-1d4
Molecule: Frizzled-4 Chain: C Fragment: Residues 42-179 Synonym: Hfz4,Fze4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fzd4 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-11268 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phlsec-Mvenus-12h
symmetry	Space Group: P 43 2 2	R_factor 0.197 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.920 98.920 120.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, MLY, NAG, PG0	enzyme
Gene Ontology	Chain Function Process Component A, B C
Primary reference	Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan., Chang TH, Hsieh FL, Zebisch M, Harlos K, Elegheert J, Jones EY, Elife. 2015 Jul 9;4. doi: 10.7554/eLife.06554. PMID:26158506

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (5bqe.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 5BQE CSU: Contacts of Structural Units for 5BQE Structure Factors (1389 Kb) Retrieve 5BQE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BQE from S2C, [Save to disk] Re-refined 5bqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BQE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BQE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bqe] [5bqe_C] [5bqe_A] [5bqe_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5BQE: [CT] [FRI ] by SMART

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