5C8T Transferase date Jun 26, 2015
title Crystal Structure Of The Sars Coronavirus Nsp14-Nsp10 Comple Functional Ligand Sam
authors Y.Y.Ma, L.J.Wu, R.G.Zhang, Z.H.Rao
compound source
Molecule: Non-Structural Protein 10
Chain: A, C
Synonym: Nsp10
Engineered: Yes
Organism_scientific: Human Sars Coronavirus
Organism_common: Sars-Cov
Organism_taxid: 227859
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Guanine-N7 Methyltransferase
Chain: B, D
Synonym: Nsp14
Ec: 2.1.1.-, 3.1.13.-
Engineered: Yes

Organism_scientific: Human Sars Coronavirus
Organism_common: Sars-Cov
Organism_taxid: 227859
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.243 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.797 196.840 180.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand MG, SAM, ZN enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural basis and functional analysis of the SARS coronavirus nsp14-nsp10 complex., Ma Y, Wu L, Shaw N, Gao Y, Wang J, Sun Y, Lou Z, Yan L, Zhang R, Rao Z, Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9436-41. doi:, 10.1073/pnas.1508686112. Epub 2015 Jul 9. PMID:26159422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (5c8t.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (5c8t.pdb2.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5C8T
  • CSU: Contacts of Structural Units for 5C8T
  • Structure Factors (986 Kb)
  • Retrieve 5C8T in mmCIF format [Save to disk]
  • Re-refined 5c8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C8T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c8t_C] [5c8t] [5c8t_D] [5c8t_B] [5c8t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5C8T
  • Community annotation for 5C8T at PDBWiki (http://pdbwiki.org)

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