5C8W Transferase date Jun 26, 2015
title Pkg II'S Amino Terminal Cyclic Nucleotide Binding Domain (Cn Complex With Cgmp
authors J.C.Campbell, A.S.Reger, G.Y.Huang, B.Sankaran, J.J.Kim, C.W.Kim
compound source
Molecule: Cgmp-Dependent Protein Kinase 2
Chain: A, B, C, D, E, F
Fragment: Unp Residues 137-277
Synonym: Cgk2,Cgmp-Dependent Protein Kinase II,Cgkii
Ec: 2.7.11.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkg2, Prkgr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.710 103.454 176.405 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MLA, NA, PCG enzyme Transferase E.C.2.7.11.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]
  • Biological Unit Coordinates (5c8w.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5c8w.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (5c8w.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (5c8w.pdb4.gz) 62 Kb
  • Biological Unit Coordinates (5c8w.pdb5.gz) 63 Kb
  • Biological Unit Coordinates (5c8w.pdb6.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5C8W
  • CSU: Contacts of Structural Units for 5C8W
  • Structure Factors (826 Kb)
  • Retrieve 5C8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C8W from S2C, [Save to disk]
  • Re-refined 5c8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C8W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c8w_C] [5c8w_F] [5c8w_A] [5c8w_E] [5c8w_B] [5c8w_D] [5c8w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C8W: [cNMP ] by SMART
    • Other resources with information on 5C8W
  • Community annotation for 5C8W at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science