5CMP Cell Adhesion date Jul 17, 2015
title Human Flrt3 Lrr Domain
authors Y.Lu, G.Salzman, D.Arac
compound source
Molecule: Leucine-Rich Repeat Transmembrane Protein Flrt3
Chain: A, B, C, D
Fragment: Unp Residues 29-357
Synonym: Fibronectin-Like Domain-Containing Leucine-Rich Transmembrane Protein 3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Flrt3, Kiaa1469, Unq856pro1865
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1 21 1
R_factor 0.232 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.140 106.581 84.152 90.00 90.31 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand NAG enzyme
Primary referenceStructural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell Adhesion., Lu YC, Nazarko OV, Sando R 3rd, Salzman GS, Sudhof TC, Arac D, Structure. 2015 Jul 28. pii: S0969-2126(15)00277-4. doi:, 10.1016/j.str.2015.06.024. PMID:26235030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (5cmp.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (5cmp.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (5cmp.pdb3.gz) 108 Kb
  • Biological Unit Coordinates (5cmp.pdb4.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5CMP
  • CSU: Contacts of Structural Units for 5CMP
  • Structure Factors (979 Kb)
  • Retrieve 5CMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CMP from S2C, [Save to disk]
  • Re-refined 5cmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CMP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cmp_B] [5cmp_C] [5cmp] [5cmp_A] [5cmp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CMP: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 5CMP
  • Community annotation for 5CMP at PDBWiki (http://pdbwiki.org)

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