5COX	Oxidoreductase	date	Dec 18, 1996
title	Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin Synthase-2
authors	R.Kurumbail, W.Stallings
compound		source
Molecule: Cyclooxygenase-2 Chain: A, B, C, D Synonym: Prostaglandin Synthase-2 Ec: 1.14.99.1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Tissue: Dermal Cell: Fibroblast Cellular_location: Endoplasmic Reticulum Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Cultured Sf21 Expression_system_tissue: Ovarian Tissue Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1393
symmetry	Space Group: P 21 21 2	R_factor 0.321 R_Free 0.308
crystal cell	length a length b length c angle alpha angle beta angle gamma 180.460 134.420 119.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	HEM, NAG	enzyme	Oxidoreductase E.C.1.14.99.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B peroxidase activity
Primary reference	Structural basis for selective inhibition of cyclooxygenase-2 by anti-inflammatory agents., Kurumbail RG, Stevens AM, Gierse JK, McDonald JJ, Stegeman RA, Pak JY, Gildehaus D, Miyashiro JM, Penning TD, Seibert K, Isakson PC, Stallings WC, Nature 1996 Dec 19-26;384(6610):644-8. PMID:8967954

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk] Biological Unit Coordinates (5cox.pdb1.gz) 178 Kb Biological Unit Coordinates (5cox.pdb2.gz) 179 Kb LPC: Ligand-Protein Contacts for 5COX CSU: Contacts of Structural Units for 5COX Likely Quarternary Molecular Structure file(s) for 5COX Structure Factors (394 Kb) Retrieve 5COX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5COX from S2C, [Save to disk] Re-refined 5cox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5COX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5COX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 5COX, from MSDmotif at EBI Genome occurence of 5COX's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d5coxa2, region A:33-73 [Jmol] [rasmolscript] [script source]     - Domain d5coxa1, region A:74-583 [Jmol] [rasmolscript] [script source]     - Domain d5coxb2, region B:33-73 [Jmol] [rasmolscript] [script source]     - Domain d5coxb1, region B:74-583 [Jmol] [rasmolscript] [script source]     - Domain d5coxc2, region C:33-73 [Jmol] [rasmolscript] [script source]     - Domain d5coxc1, region C:74-583 [Jmol] [rasmolscript] [script source]     - Domain d5coxd2, region D:33-73 [Jmol] [rasmolscript] [script source]     - Domain d5coxd1, region D:74-583 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cox_A] [5cox] [5cox_B] [5cox_C] [5cox_D] SWISS-PROT database: [Q05769] Domain organization of [PGH2_MOUSE] by SWISSPFAM Domain found in 5COX: [EGF ] by SMART

Other resources with information on 5COX

Community annotation for 5COX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---