5CRX Protein Dna date Apr 21, 1999
title Asymmetric Dna-Bending In The Cre-Loxp Site-Specific Recombi Synapse
authors F.Guo, D.N.Gopaul, G.D.Van Duyne
compound source
Molecule: Dna (35-Mer)
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Bacteriophage P1 Cre Gene)
Chain: A, B
Engineered: Yes
Mutation: Yes

Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
Atcc: 25404-B1
Collection: 25404-B1
Gene: Cre
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasmic
Expression_system_plasmid: Pet21a
symmetry Space Group: C 2 2 21
R_factor 0.227 R_Free 0.304
length a length b length c angle alpha angle beta angle gamma
107.100 123.100 180.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1PVQ, 1PVR
A, B

Primary referenceAsymmetric DNA bending in the Cre-loxP site-specific recombination synapse., Guo F, Gopaul DN, Van Duyne GD, Proc Natl Acad Sci U S A 1999 Jun 22;96(13):7143-8. PMID:10377382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5crx.pdb1.gz) 251 Kb
  • CSU: Contacts of Structural Units for 5CRX
  • Likely Quarternary Molecular Structure file(s) for 5CRX
  • Retrieve 5CRX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CRX from S2C, [Save to disk]
  • View 5CRX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CRX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 5CRX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5crxa2, region A:130-340 [Jmol] [rasmolscript] [script source]
        - Domain d5crxa1, region A:19-129 [Jmol] [rasmolscript] [script source]
        - Domain d5crxb2, region B:130-314 [Jmol] [rasmolscript] [script source]
        - Domain d5crxb1, region B:19-129 [Jmol] [rasmolscript] [script source]
  • Fold representative 5crx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5crx_C] [5crx_A] [5crx] [5crx_D] [5crx_B]
  • SWISS-PROT database: [P06956]
  • Domain organization of [RECR_BPP1] by SWISSPFAM
  • Other resources with information on 5CRX
  • Community annotation for 5CRX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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