5D12	Transferase	date	Aug 03, 2015
title	Kinase Domain Of Csrc In Complex With Rl40
authors	C.Becker, A.Richters, J.Engel, D.Rauh
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A, B Fragment: Unp Residues 251-533 Synonym: Proto-Oncogene C-Src,Pp60c-Src,P60-Src Ec: 2.7.10.2 Engineered: Yes Mutation: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Src Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.290 R_Free 0.376
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.270 63.790 74.970 101.56 89.91 89.98
method	X-Ray Diffraction	resolution	3.00 Å
ligand	G97	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Targeting Drug Resistance in EGFR with Covalent Inhibitors: A Structure-Based Design Approach., Engel J, Richters A, Getlik M, Tomassi S, Keul M, Termathe M, Lategahn J, Becker C, Mayer-Wrangowski S, Grutter C, Uhlenbrock N, Krull J, Schaumann N, Eppmann S, Kibies P, Hoffgaard F, Heil J, Menninger S, Ortiz-Cuaran S, Heuckmann JM, Tinnefeld V, Zahedi RP, Sos ML, Schultz-Fademrecht C, Thomas RK, Kast SM, Rauh D, J Med Chem. 2015 Aug 31. PMID:26275028

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (5d12.pdb1.gz) 44 Kb Biological Unit Coordinates (5d12.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 5D12 CSU: Contacts of Structural Units for 5D12 Structure Factors (272 Kb) Retrieve 5D12 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D12 from S2C, [Save to disk] Re-refined 5d12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D12 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D12

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d12_B] [5d12_A] [5d12] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5D12: [TyrKc ] by SMART

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