5D5H date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights from the Structure of Mycobacterium tuberculosis Topoisomerase I with a Novel Protein Fold., Tan K, Cao N, Cheng B, Joachimiak A, Tse-Dinh YC, J Mol Biol. 2015 Dec 3. pii: S0022-2836(15)00686-5. doi:, 10.1016/j.jmb.2015.11.024. PMID:26655023
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5h.pdb1.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 5D5H
  • CSU: Contacts of Structural Units for 5D5H
  • Structure Factors (793 Kb)
  • Retrieve 5D5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5H from S2C, [Save to disk]
  • Re-refined 5d5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5h] [5d5h_A]
  • SWISS-PROT database:
  • Domains found in 5D5H: [TOP1Ac] [TOP1Bc] [TOPRIM ] by SMART

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