5D5M date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2LJ, ACT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, D
  • cellular response to iron io...

    • Primary referenceDiversity of T Cells Restricted by the MHC Class I-Related Molecule MR1 Facilitates Differential Antigen Recognition., Gherardin NA, Keller AN, Woolley RE, Le Nours J, Ritchie DS, Neeson PJ, Birkinshaw RW, Eckle SB, Waddington JN, Liu L, Fairlie DP, Uldrich AP, Pellicci DG, McCluskey J, Godfrey DI, Rossjohn J, Immunity. 2016 Jan 19;44(1):32-45. doi: 10.1016/j.immuni.2015.12.005. Epub 2016, Jan 12. PMID:26795251
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5m.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (5d5m.pdb2.gz) 135 Kb
  • Biological Unit Coordinates (5d5m.pdb3.gz) 151 Kb
  • Biological Unit Coordinates (5d5m.pdb4.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 5D5M
  • CSU: Contacts of Structural Units for 5D5M
  • Structure Factors (5627 Kb)
  • Retrieve 5D5M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5M from S2C, [Save to disk]
  • Re-refined 5d5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D5M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5m] [5d5m_A] [5d5m_B] [5d5m_C] [5d5m_D] [5d5m_E] [5d5m_F] [5d5m_G] [5d5m_H]
  • SWISS-PROT database:
  • Domains found in 5D5M: [IG_like] [IGc1] [IGv ] by SMART

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