OCA Atlas for 5D7J

5D7J

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2LJ, GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, F		cellular response to iron io...

Primary reference

Diversity of T Cells Restricted by the MHC Class I-Related Molecule MR1 Facilitates Differential Antigen Recognition., Gherardin NA, Keller AN, Woolley RE, Le Nours J, Ritchie DS, Neeson PJ, Birkinshaw RW, Eckle SB, Waddington JN, Liu L, Fairlie DP, Uldrich AP, Pellicci DG, McCluskey J, Godfrey DI, Rossjohn J, Immunity. 2016 Jan 19;44(1):32-45. doi: 10.1016/j.immuni.2015.12.005. Epub 2016, Jan 12. PMID:26795251

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (558 Kb) [Save to disk]

Biological Unit Coordinates (5d7j.pdb1.gz) 273 Kb

Biological Unit Coordinates (5d7j.pdb2.gz) 276 Kb

LPC: Ligand-Protein Contacts for 5D7J

CSU: Contacts of Structural Units for 5D7J

Structure Factors (7832 Kb)

Retrieve 5D7J in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D7J from S2C, [Save to disk]

Re-refined 5d7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7J in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7j] [5d7j_A] [5d7j_B] [5d7j_C] [5d7j_D] [5d7j_E] [5d7j_F] [5d7j_G] [5d7j_H]

SWISS-PROT database:

Domains found in 5D7J: [IG_like] [IGc1] [IGv ] by SMART

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