5D9S		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove., McMurtrey C, Trolle T, Sansom T, Remesh SG, Kaever T, Bardet W, Jackson K, McLeod R, Sette A, Nielsen M, Zajonc DM, Blader IJ, Peters B, Hildebrand W, Elife. 2016 Jan 29;5. pii: e12556. doi: 10.7554/eLife.12556. PMID:26824387

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (5d9s.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 5D9S CSU: Contacts of Structural Units for 5D9S Structure Factors (654 Kb) Retrieve 5D9S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D9S from S2C, [Save to disk] Re-refined 5d9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D9S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d9s] [5d9s_A] [5d9s_B] [5d9s_C] SWISS-PROT database: Domain found in 5D9S: [IGc1 ] by SMART

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