5DA3	Transferase Transferase Inhibitor	date	Aug 19, 2015
title	Crystal Structure Of Ptk6 Kinase Domain With Inhibitor
authors	M.K.Thakur, S.Birudukota, S.Swaminathan, S.K.Battula, S.Vadivelu R.Gosu
compound		source
Molecule: Protein-Tyrosine Kinase 6 Chain: A Fragment: Kinase Domain, Unp Residues 185-446 Synonym: Breast Tumor Kinase,Tyrosine-Protein Kinase Brk Ec: 2.7.10.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptk6 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1
symmetry	Space Group: C 1 2 1	R_factor 0.197 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.372 48.403 71.924 90.00 105.14 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	58V, CXM, GOL	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Co-crystal structures of PTK6: With Dasatinib at 2.24 A, with novel imidazo[1,2-a]pyrazin-8-amine derivative inhibitor at 1.70 A resolution., Thakur MK, Birudukota S, Swaminathan S, Battula SK, Vadivelu S, Tyagi R, Gosu R, Biochem Biophys Res Commun. 2016 Dec 18. pii: S0006-291X(16)32070-8. doi:, 10.1016/j.bbrc.2016.12.030. PMID:27993680

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (5da3.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 5DA3 CSU: Contacts of Structural Units for 5DA3 Structure Factors (318 Kb) Retrieve 5DA3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DA3 from S2C, [Save to disk] Re-refined 5da3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DA3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DA3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5da3] [5da3_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DA3: [TyrKc ] by SMART

Other resources with information on 5DA3

Community annotation for 5DA3 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---