5DAR	Ribosomal Protein	date	Aug 20, 2015
title	Crystal Structure Of The Base Of The Ribosomal P Stalk From Methanococcus Jannaschii
authors	A.G.Gabdulkhakov, I.V.Mitroshin, M.B.Garber
compound		source
Molecule: 74 Nt Fragment Of 23s Rrna Chain: A, D Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Xl1(Blue) Expression_system_vector_type: Puc18 Expression_system_plasmid: Pmja23s-74.Uc18
Molecule: 50s Ribosomal Protein L10 Chain: B, E Synonym: Acidic Ribosomal Protein P0 Homolog,Mjal10 Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Gene: Rpl10, Rplp0, Mj0509 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Pubs520 Expression_system_vector_type: Plasmid Expression_system_vector: Pet-11c Expression_system_plasmid: Pet-11cmjap0ntf
Molecule: 50s Ribosomal Protein L11 Chain: C, F Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Gene: Rpl11, Mj0373 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Pubs520 Expression_system_vector_type: Pet-11c Expression_system_plasmid: Pet-11cmjal11
symmetry	Space Group: P 1 21 1	R_factor 0.264 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.396 88.451 95.231 90.00 102.19 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CL, K, MG	enzyme
Gene Ontology	Chain Function Process Component E, B F, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (5dar.pdb1.gz) 82 Kb Biological Unit Coordinates (5dar.pdb2.gz) 88 Kb LPC: Ligand-Protein Contacts for 5DAR CSU: Contacts of Structural Units for 5DAR Structure Factors (1402 Kb) Retrieve 5DAR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DAR from S2C, [Save to disk] Re-refined 5dar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DAR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DAR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dar_E] [5dar_C] [5dar_F] [5dar] [5dar_A] [5dar_D] [5dar_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DAR: [RL11 ] by SMART

Other resources with information on 5DAR

Community annotation for 5DAR at PDBWiki (http://pdbwiki.org)

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