5DED date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 0O2, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, G, B, F, H, E, D, A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (5ded.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (5ded.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5DED
  • CSU: Contacts of Structural Units for 5DED
  • Structure Factors (824 Kb)
  • Retrieve 5DED in mmCIF format [Save to disk]
  • Re-refined 5ded structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ded] [5ded_A] [5ded_B] [5ded_C] [5ded_D] [5ded_E] [5ded_F] [5ded_G] [5ded_H]
  • SWISS-PROT database:
  • Domain found in 5DED: [RelA_SpoT ] by SMART

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