5DGO Cell Cycle date Aug 28, 2015
title Crystal Structure Of Cell Division Cycle Protein 45 (Cdc45)
authors A.C.Simon, L.Pellegrini
compound source
Molecule: Cell Division Control Protein 45 Homolog
Chain: A
Synonym: Porc-Pi-1
Engineered: Yes
Other_details: Residues 154 To 164 (11 Aminoacids) Were Lef The Expression Construct Used For Determination Of The Crys Structure.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc45, Cdc45l, Cdc45l2, Unq374pro710
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2
Expression_system_plasmid: Prsfduet-1
symmetry Space Group: P 31 2 1
R_factor 0.168 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.795 112.795 143.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5dgo.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 5DGO
  • CSU: Contacts of Structural Units for 5DGO
  • Structure Factors (1063 Kb)
  • Retrieve 5DGO in mmCIF format [Save to disk]
  • Re-refined 5dgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DGO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dgo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dgo_A] [5dgo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DGO
  • Community annotation for 5DGO at PDBWiki (http://pdbwiki.org)

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