5DKH Transcription date Sep 03, 2015
title Crystal Structure Of The Bromodomain Of Human Brm (Smarca2) With A Hydroxyphenyl Propenone Inhibitor 17
authors C.Tallant, D.R.Owen, A.Taylor, O.Fedorov, P.Savitsky, P.Siejka, V.Srikannathasan, R.Nowak, F.Von Delft, C.H.Arrowsmith, A.M.Edw C.Bountra, S.Knapp
compound source
Molecule: Probable Global Transcription Activator Snf2l2
Chain: A, B, C
Fragment: Unp Residues 1373-1493
Synonym: Atp-Dependent Helicase Smarca2,Brg1-Associated Fac Baf190b,Protein Brahma Homolog,Hbrm,Snf2-Alpha,Swisnf-Rela Matrix-Associated Actin-Dependent Regulator Of Chromatin Su Member 2;
Ec: 3.6.4.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarca2, Baf190b, Brm, Snf2a, Snf2l2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31
R_factor 0.199 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.997 63.997 89.160 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 5C0, EDO, ZN enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (5dkh.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (5dkh.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (5dkh.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5DKH
  • CSU: Contacts of Structural Units for 5DKH
  • Structure Factors (814 Kb)
  • Retrieve 5DKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DKH from S2C, [Save to disk]
  • Re-refined 5dkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DKH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dkh] [5dkh_B] [5dkh_C] [5dkh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DKH: [BROMO ] by SMART
  • Other resources with information on 5DKH
  • Community annotation for 5DKH at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science