5DLQ Protein Transport date Sep 07, 2015
title Crystal Structure Of Rangtp-Exportin 4-Eif5a Complex
authors M.Aksu, S.Trakhanov, D.Gorlich
compound source
Molecule: Exportin-4
Chain: B, A
Synonym: Exp4
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Xpo4, Kiaa1721
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Top10 F'
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe-80

Molecule: Gtp-Binding Nuclear Protein Ran
Chain: C, D
Synonym: Androgen Receptor-Associated Protein 24,Gtpase Ran Protein Tc4,Ras-Related Nuclear Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ran, Ara24, Oksw-Cl.81
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Top10 F'
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe-80

Molecule: Eukaryotic Translation Initiation Factor 5a-1
Chain: F, E
Synonym: Eif-5a1,Eukaryotic Initiation Factor 5a Isoform 1, Rev-Binding Factor,Eif-4d;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif5a
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Neb Express
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe-80
symmetry Space Group: P 31 2 1
R_factor 0.221 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.616 98.616 726.864 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand 5CT, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


F, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (908 Kb) [Save to disk]
  • Biological Unit Coordinates (5dlq.pdb1.gz) 463 Kb
  • Biological Unit Coordinates (5dlq.pdb2.gz) 438 Kb
  • LPC: Ligand-Protein Contacts for 5DLQ
  • CSU: Contacts of Structural Units for 5DLQ
  • Structure Factors (1104 Kb)
  • Retrieve 5DLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DLQ from S2C, [Save to disk]
  • Re-refined 5dlq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DLQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dlq_C] [5dlq_B] [5dlq_F] [5dlq] [5dlq_D] [5dlq_E] [5dlq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DLQ: [RAN] [eIF-5a ] by SMART
  • Other resources with information on 5DLQ
  • Community annotation for 5DLQ at PDBWiki (http://pdbwiki.org)

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