5DMZ	Transferase	date	Sep 09, 2015
title	Structure Of Human Bub1 Kinase Domain Phosphorylated At Ser9
authors	C.Breit, J.R.Weir, A.Musacchio
compound		source
Molecule: Mitotic Checkpoint Serinethreonine-Protein Kinas Chain: A, B Fragment: Unp Residues 726-1085 Synonym: Hbub1,Bub1a Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bub1, Bub1l Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
symmetry	Space Group: P 1 21 1	R_factor 0.211 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.380 66.340 106.540 90.00 98.34 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ADP, MG, SEP	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Role of Intrinsic and Extrinsic Factors in the Regulation of the Mitotic Checkpoint Kinase Bub1., Breit C, Bange T, Petrovic A, Weir JR, Muller F, Vogt D, Musacchio A, PLoS One. 2015 Dec 10;10(12):e0144673. doi: 10.1371/journal.pone.0144673., eCollection 2015. PMID:26658523

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk] Biological Unit Coordinates (5dmz.pdb1.gz) 170 Kb Biological Unit Coordinates (5dmz.pdb2.gz) 170 Kb LPC: Ligand-Protein Contacts for 5DMZ CSU: Contacts of Structural Units for 5DMZ Structure Factors (282 Kb) Retrieve 5DMZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DMZ from S2C, [Save to disk] Re-refined 5dmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DMZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DMZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dmz_B] [5dmz_A] [5dmz] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DMZ: [STYKc ] by SMART

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