5DN5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, IOD, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


Primary referenceStructural and Biochemical Insights into the Peptidoglycan Hydrolase Domain of FlgJ from Salmonella typhimurium., Zaloba P, Bailey-Elkin BA, Derksen M, Mark BL, PLoS One. 2016 Feb 12;11(2):e0149204. doi: 10.1371/journal.pone.0149204., eCollection 2016. PMID:26871950
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5dn5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (5dn5.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (5dn5.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5DN5
  • CSU: Contacts of Structural Units for 5DN5
  • Structure Factors (326 Kb)
  • Retrieve 5DN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DN5 from S2C, [Save to disk]
  • Re-refined 5dn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dn5] [5dn5_A] [5dn5_B] [5dn5_C]
  • SWISS-PROT database:
  • Domain found in 5DN5: [LYZ2 ] by SMART

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