5DO9 Protein Binding date Sep 10, 2015
title Structure Of Regulator Of G Protein Signaling 8 (Rgs8) In Co Alf4-Activated Galpha-Q
authors V.G.Taylor, J.J.G.Tesmer
compound source
Molecule: Guanine Nucleotide-Binding Protein G(Q) Subunit A
Chain: A, C, E
Fragment: Guanine Nucleotide-Binding Protein G(Q) Subunit A
Synonym: Guanine Nucleotide-Binding Protein Alpha-Q
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Gnaq
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac Ht A

Molecule: Regulator Of G-Protein Signaling 8
Chain: B, D, F
Fragment: Rgs Domain
Synonym: Rgs8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rgs8
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqtev
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.946 95.881 112.898 90.00 94.31 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ALF, GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceStructure of the Regulator of G Protein Signaling 8 (RGS8)-Galphaq Complex: Molecular Basis for Galpha Selectivity., Taylor VG, Bommarito PA, Tesmer JJ, J Biol Chem. 2016 Jan 11. pii: jbc.M115.712075. PMID:26755720
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • Biological Unit Coordinates (5do9.pdb1.gz) 162 Kb
  • Biological Unit Coordinates (5do9.pdb2.gz) 164 Kb
  • Biological Unit Coordinates (5do9.pdb3.gz) 162 Kb
  • Biological Unit Coordinates (5do9.pdb4.gz) 162 Kb
  • Biological Unit Coordinates (5do9.pdb5.gz) 164 Kb
  • Biological Unit Coordinates (5do9.pdb6.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 5DO9
  • CSU: Contacts of Structural Units for 5DO9
  • Structure Factors (1635 Kb)
  • Retrieve 5DO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DO9 from S2C, [Save to disk]
  • Re-refined 5do9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DO9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5do9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5do9_F] [5do9_B] [5do9_C] [5do9_E] [5do9_D] [5do9_A] [5do9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DO9: [G_alpha] [RGS ] by SMART
  • Other resources with information on 5DO9
  • Community annotation for 5DO9 at PDBWiki (http://pdbwiki.org)

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