5DSV	Hydrolase	date	Sep 17, 2015
title	Crystal Structure Of Human Proteasome Alpha7 Tetradecamer
authors	T.Satoh, R.Thammaporn, S.Seetaha, K.Kato
compound		source
Molecule: Proteasome Subunit Alpha Type-3 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N Synonym: Proteasome Alpha7 Subunit,Macropain Subunit C8, Multicatalytic Endopeptidase Complex Subunit C8,Proteasome C8; Ec: 3.4.25.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Psma3, Hc8, Psc8 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsf-Duet1
symmetry	Space Group: P 43 21 2	R_factor 0.209 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.481 132.481 444.563 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.75 Å
ligand		enzyme	Hydrolase E.C.3.4.25.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, N, K, E, B, H, M, C, D, I, G, L
Primary reference	Disassembly of the self-assembled, double-ring structure of proteasome alpha7 homo-tetradecamer by alpha6., Ishii K, Noda M, Yagi H, Thammaporn R, Seetaha S, Satoh T, Kato K, Uchiyama S, Sci Rep. 2015 Dec 14;5:18167. doi: 10.1038/srep18167. PMID:26657688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (539 Kb) [Save to disk] Biological Unit Coordinates (5dsv.pdb1.gz) 531 Kb CSU: Contacts of Structural Units for 5DSV Structure Factors (768 Kb) Retrieve 5DSV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DSV from S2C, [Save to disk] Re-refined 5dsv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DSV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DSV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dsv] [5dsv_G] [5dsv_E] [5dsv_A] [5dsv_J] [5dsv_C] [5dsv_D] [5dsv_M] [5dsv_I] [5dsv_F] [5dsv_L] [5dsv_B] [5dsv_H] [5dsv_K] [5dsv_N] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DSV: [Proteasome_A_N ] by SMART

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