5DV2 Hydrolase date Sep 21, 2015
title Crystal Structure Of Human Cnot6l In Complex With Cytidine-5 Monophosphate
authors Q.Zhang, M.Bartlam
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 6-Like
Chain: A
Fragment: Unp Residues 158-555
Synonym: Carbon Catabolite Repressor Protein 4 Homolog B
Ec: 3.1.13.4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cnot6l, Ccr4b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.183 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.051 77.051 167.650 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand C5P enzyme Hydrolase E.C.3.1.13.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5dv2.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 5DV2
  • CSU: Contacts of Structural Units for 5DV2
  • Structure Factors (242 Kb)
  • Retrieve 5DV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DV2 from S2C, [Save to disk]
  • Re-refined 5dv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DV2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dv2_A] [5dv2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DV2
  • Community annotation for 5DV2 at PDBWiki (http://pdbwiki.org)

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