5DZB
De Novo Protein
date
Sep 25, 2015
title
6beta1
authors
B.V.Kabasakal, J.T.Macdonald, W.W.Murray
compound
source
Molecule
: 6beta1
Chain
: A, B, C, D, E, F
Engineered
: Yes
Organism_scientific
: Synthetic Construct
Organism_taxid
: 32630
Expression_system
: Escherichia Coli
Expression_system_taxid
: 562
Expression_system_vector_type
: Plasmid
Expression_system_plasmid
: Prseta
symmetry
Space Group
: P 21 21 21
R_factor
0.197
R_Free
0.265
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
56.960
86.530
362.320
90.00
90.00
90.00
method
X-Ray Diffraction
resolution
3.33 Å
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(449 Kb)
[Save to disk]
Biological Unit Coordinates
(5dzb.pdb1.gz) 148 Kb
Biological Unit Coordinates
(5dzb.pdb2.gz) 145 Kb
Biological Unit Coordinates
(5dzb.pdb3.gz) 145 Kb
CSU:
Contacts of Structural Units
for 5DZB
Structure Factors
(1595 Kb)
Retrieve 5DZB in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5DZB
from
S2C
,
[Save to disk]
Re-refined
5dzb
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 5DZB in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5DZB
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5dzb]
[5dzb_B]
[5dzb_F]
[5dzb_E]
[5dzb_A]
[5dzb_D]
[5dzb_C]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Other resources with information on 5DZB
Community annotation for
5DZB
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
Go [
Back
], to the [
PDB Lite
page], to the [
OCA Search
page] or to the [
PDB Home
page]
OCA© by
Jaime Prilusky
, 1996-2014,2022
Bioinformatics Unit
Weizmann Institute of Science