5E5T Quasi-racemic snakin-1 in P1 after radiation damage date
authors Yeung, H., Squire, C.J., Yosaatmadja, Y., Panjikar, S., Baker, E.N., Harris, P.W.R., Brimble, M.A.
compound source
symmetry
R_factor
R_Free 0.2426
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.57
ligand DAL, DAR, DAS, DCY, DGL, DHI, DIL, DLE, DLY, DPN, DPR, DSG, DSN, DTH, DTY, DVA, EDO, FMT, PHI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceRadiation Damage and Racemic Protein Crystallography Reveal the Unique Structure of the GASA/Snakin Protein Superfamily., Yeung H, Squire CJ, Yosaatmadja Y, Panjikar S, Lopez G, Molina A, Baker EN, Harris PW, Brimble MA, Angew Chem Int Ed Engl. 2016 May 4. doi: 10.1002/anie.201602719. PMID:27145301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5e5t.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (5e5t.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (5e5t.pdb3.gz) 13 Kb
  • Biological Unit Coordinates (5e5t.pdb4.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 5E5T
  • CSU: Contacts of Structural Units for 5E5T
  • Structure Factors (635 Kb)
  • Retrieve 5E5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E5T from S2C, [Save to disk]
  • Re-refined 5e5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E5T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e5t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e5t_C] [5e5t_D] [5e5t_A] [5e5t] [5e5t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5E5T
  • Community annotation for 5E5T at PDBWiki (http://pdbwiki.org)

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