5EDU	Hydrolase Hydrolase Inhibitor	date	Oct 22, 2015
title	Crystal Structure Of Human Histone Deacetylase 6 Catalytic D Complex With Trichostatin A
authors	Y.Hai, D.W.Christianson
compound		source
Molecule: Maltose-Binding Periplasmic Protein, Histone Deac Chimera; Chain: B, A Fragment: Mbp + Hd6 Catalytic Domain 2 (Unp Residues 479-83 Synonym: Mbp, Mmbp, Maltodextrin-Binding Protein, Hd6 Ec: 3.5.1.98 Engineered: Yes		Organism_scientific: Escherichia Coli, Homo Sapiens Organism_common: Human Organism_taxid: 562, 9606 Gene: Male, Z5632, Ecs5017, Hdac6, Kiaa0901, Jm21 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28lic
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.262 149.032 216.333 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.79 Å
ligand	GLC, K, TSN, ZN	enzyme	Hydrolase E.C.3.5.1.98 BRENDA
Gene Ontology	Chain Function Process Component A, B carbohydrate transmembrane t...
Primary reference	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition., Hai Y, Christianson DW, Nat Chem Biol. 2016 Jul 25. doi: 10.1038/nchembio.2134. PMID:27454933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk] Biological Unit Coordinates (5edu.pdb1.gz) 230 Kb Biological Unit Coordinates (5edu.pdb2.gz) 228 Kb LPC: Ligand-Protein Contacts for 5EDU CSU: Contacts of Structural Units for 5EDU Structure Factors (726 Kb) Retrieve 5EDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EDU from S2C, [Save to disk] Re-refined 5edu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5edu] [5edu_B] [5edu_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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