OCA Atlas for 5EEA

5EEA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
J, A, B, G

Primary reference

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima., Morgunova E, Yin Y, Das PK, Jolma A, Zhu F, Popov A, Xu Y, Nilsson L, Taipale J, Elife. 2018 Apr 11;7. pii: 32963. doi: 10.7554/eLife.32963. PMID:29638214

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]

Biological Unit Coordinates (5eea.pdb1.gz) 29 Kb

Biological Unit Coordinates (5eea.pdb2.gz) 28 Kb

Biological Unit Coordinates (5eea.pdb3.gz) 28 Kb

Biological Unit Coordinates (5eea.pdb4.gz) 28 Kb

CSU: Contacts of Structural Units for 5EEA

Structure Factors (3003 Kb)

Retrieve 5EEA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5EEA from S2C, [Save to disk]

Re-refined 5eea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EEA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eea] [5eea_A] [5eea_B] [5eea_C] [5eea_D] [5eea_E] [5eea_F] [5eea_G] [5eea_H] [5eea_I] [5eea_J] [5eea_K] [5eea_L]

SWISS-PROT database:

Domain found in 5EEA: [HOX ] by SMART

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