5EEA	Transcription	date	Oct 22, 2015
title	Structure Of Hoxb13-Dna(Caa) Complex
authors	E.Morgunova, Y.Yin, A.Jolma, A.Popov, J.Taipale
compound		source
Molecule: Dna (5'- D(Ptptpgptpgptptptptpaptptpgpgpgptpcpc)-3 Chain: D, C, H, K Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Pgpgpapcpcpcpapaptpapapapapcpapcpapa)-3 Chain: E, F, I, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Homeobox Protein Hox-B13 Chain: B, A, G, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hoxb13 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Petg20a
symmetry	Space Group: P 1 2 1	R_factor 0.251 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.356 57.918 101.278 90.00 101.57 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component A, J, G, B
Primary reference	Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima., Morgunova E, Yin Y, Das PK, Jolma A, Zhu F, Popov A, Xu Y, Nilsson L, Taipale J, Elife. 2018 Apr 11;7. pii: 32963. doi: 10.7554/eLife.32963. PMID:29638214

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (5eea.pdb1.gz) 29 Kb Biological Unit Coordinates (5eea.pdb2.gz) 28 Kb Biological Unit Coordinates (5eea.pdb3.gz) 28 Kb Biological Unit Coordinates (5eea.pdb4.gz) 28 Kb CSU: Contacts of Structural Units for 5EEA Structure Factors (3003 Kb) Retrieve 5EEA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EEA from S2C, [Save to disk] Re-refined 5eea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EEA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EEA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5eea_E] [5eea_G] [5eea_F] [5eea_H] [5eea_A] [5eea_B] [5eea_K] [5eea_I] [5eea_C] [5eea_L] [5eea] [5eea_D] [5eea_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EEA: [HOX ] by SMART

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