5EOM Transferase date Nov 10, 2015
title Structure Of Full-Length Human Mab21l1 With Bound Ctp
authors C.C.De Oliveira Mann, G.Witte, K.P.Hopfner
compound source
Molecule: Protein Mab-21-Like 1
Chain: A, B, D, E, F, G, H, I, J, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mab21l1, Cagr1, Nbla00126
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.000 177.760 134.940 90.00 97.58 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand CIT, CTP, TMO enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceStructural and biochemical characterization of the cell fate determining nucleotidyltransferase fold protein MAB21L1., de Oliveira Mann CC, Kiefersauer R, Witte G, Hopfner KP, Sci Rep. 2016 Jun 8;6:27498. doi: 10.1038/srep27498. PMID:27271801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1210 Kb) [Save to disk]
  • Biological Unit Coordinates (5eom.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (5eom.pdb2.gz) 128 Kb
  • Biological Unit Coordinates (5eom.pdb3.gz) 127 Kb
  • Biological Unit Coordinates (5eom.pdb4.gz) 127 Kb
  • Biological Unit Coordinates (5eom.pdb5.gz) 126 Kb
  • Biological Unit Coordinates (5eom.pdb6.gz) 129 Kb
  • Biological Unit Coordinates (5eom.pdb7.gz) 127 Kb
  • Biological Unit Coordinates (5eom.pdb8.gz) 129 Kb
  • Biological Unit Coordinates (5eom.pdb9.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5EOM
  • CSU: Contacts of Structural Units for 5EOM
  • Structure Factors (3038 Kb)
  • Retrieve 5EOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EOM from S2C, [Save to disk]
  • Re-refined 5eom structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EOM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eom] [5eom_I] [5eom_H] [5eom_G] [5eom_F] [5eom_J] [5eom_E] [5eom_D] [5eom_A] [5eom_C] [5eom_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EOM: [Mab-21 ] by SMART
  • Other resources with information on 5EOM
  • Community annotation for 5EOM at PDBWiki (http://pdbwiki.org)

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