5EPD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form., Zahradnik J, Kolenko P, Palyzova A, Cerny J, Kolarova L, Kyslikova E, Maresova H, Grulich M, Nunvar J, Sulc M, Kyslik P, Schneider B, PLoS One. 2018 Apr 9;13(4):e0195299. doi: 10.1371/journal.pone.0195299., eCollection 2018. PMID:29630677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5epd.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 5EPD
  • Structure Factors (1253 Kb)
  • Retrieve 5EPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EPD from S2C, [Save to disk]
  • Re-refined 5epd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5epd] [5epd_A]
  • SWISS-PROT database:

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