5EPP	Hydrolase	date	Nov 12, 2015
title	Structural Insights Into The Interaction Of P97 N-Terminus D Vbm Motif In Rhomboid Protease, Rhbdl4
authors	J.J.Lim, Y.Lee, T.T.Ly, J.Y.Kang, J.G.Lee, J.Y.An, H.S.Youn, K.R. T.G.Kim, J.K.Yang, Y.Jun, S.H.Eom
compound		source
Molecule: Transitional Endoplasmic Reticulum Atpase Chain: A Fragment: Unp Residues 21-199 Synonym: Ter Atpase,15s Mg(2+)-Atpase P97 Subunit,Valosin-C Protein,Vcp; Ec: 3.6.4.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcp Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rhomboid-Related Protein 4 Chain: B Fragment: Vbm Motif (Residues 300-314) Synonym: Rrp4,Rhomboid Domain-Containing Protein 1,Rhomboid Protein 4; Ec: 3.4.21.105 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 65	R_factor 0.177 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.999 96.999 50.902 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.88 Å
ligand		enzyme	Hydrolase E.C.3.6.4.6 BRENDA
Primary reference	Structural insights into the interaction of p97 N-terminus domain and VBM in rhomboid protease, RHBDL4., Lim JJ, Lee Y, Ly TT, Kang JY, Lee JG, An JY, Youn HS, Park KR, Kim TG, Yang JK, Jun Y, Eom SH, Biochem J. 2016 Sep 15;473(18):2863-80. doi: 10.1042/BCJ20160237. Epub 2016 Jul, 12. PMID:27407164

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (5epp.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 5EPP Structure Factors (368 Kb) Retrieve 5EPP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EPP from S2C, [Save to disk] Re-refined 5epp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5epp_B] [5epp] [5epp_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5EPP: [CDC48_2] [CDC48_N ] by SMART

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