5ERE Signaling Protein date Nov 14, 2015
title Extracellular Ligand Binding Receptor From Desulfohalobium R Dsm5692
authors M.Cuff, R.Wu, M.Endres, P.R.Pokkuluri, A.Joachimiak, Midwest Cent Structural Genomics (Mcsg)
compound source
Molecule: Extracellular Ligand-Binding Receptor
Chain: A
Fragment: Unp Residues 32-599
Engineered: Yes
 Organism_scientific: Desulfohalobium Retbaense Dsm 5692
Organism_taxid: 485915
Strain: Dsm 5692
Gene: Dret_0059
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.172 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.946 104.946 140.181 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACY, CA, COI, CYT, EDO, GOL, MSE enzyme
Gene DRET
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (5ere.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 5ERE
  • CSU: Contacts of Structural Units for 5ERE
  • Structure Factors (1084 Kb)
  • Retrieve 5ERE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ERE from S2C, [Save to disk]
  • Re-refined 5ere structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ERE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ERE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ere_A] [5ere]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ERE
  • Community annotation for 5ERE at PDBWiki (http://pdbwiki.org)

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