5F4H	Hydrolase	date	Dec 03, 2015
title	Archael Ruvb-Like Holiday Junction Helicase
authors	B.Zhai, K.T.Duprez, T.I.Doukov, Y.Shen, L.Fan
compound		source
Molecule: Nucleotide Binding Protein Pinc Chain: A, B, C, D, E, F Engineered: Yes Mutation: Yes		Organism_scientific: Sulfolobus Islandicus (Strain L.S.2.15 #1); Organism_taxid: 429572 Strain: L.S.2.15 Lassen #1 Gene: Ls215_1665 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.227 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.720 148.980 122.130 90.00 104.07 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	EDO, GOL	enzyme
Gene	LS215
Primary reference	Structure and Function of a Novel ATPase that Interacts with Holliday Junction Resolvase Hjc and Promotes Branch Migration., Zhai B, DuPrez K, Doukov TI, Li H, Huang M, Shang G, Ni J, Gu L, Shen Y, Fan L, J Mol Biol. 2017 Apr 7;429(7):1009-1029. doi: 10.1016/j.jmb.2017.02.016. Epub, 2017 Feb 24. PMID:28238763

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (864 Kb) [Save to disk] Biological Unit Coordinates (5f4h.pdb1.gz) 853 Kb LPC: Ligand-Protein Contacts for 5F4H CSU: Contacts of Structural Units for 5F4H Structure Factors (2015 Kb) Retrieve 5F4H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F4H from S2C, [Save to disk] Re-refined 5f4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F4H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F4H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f4h] [5f4h_C] [5f4h_B] [5f4h_D] [5f4h_F] [5f4h_A] [5f4h_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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