5F5P	Protein Binding	date	Dec 04, 2015
title	Molecular Basis For Shroom2 Recognition By Rock1
authors	J.K.Zalewski, A.P.Vandemark, A.Heroux
compound		source
Molecule: Protein Shroom2 Chain: A, B, G, H Fragment: Residues 1427-1610 Synonym: Apical-Like Protein,Protein Apxl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Shroom2, Apxl Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet151
Molecule: Rho-Associated Protein Kinase 1 Chain: C, D, E, F Synonym: Renal Carcinoma Antigen Ny-Ren-35,Rho-Associated,C Coil-Containing Protein Kinase 1,Coiled-Coil-Containing Pro Kinase I,Rock-I,P160 Rock-1,P160rock; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rock1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Ripl
symmetry	Space Group: P 21 21 21	R_factor 0.271 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.587 133.795 135.871 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.57 Å
ligand	CL	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component H, A, G, B
Primary reference	Structure of the Shroom-Rho kinase complex reveals a binding interface with monomeric Shroom that regulates cell morphology and stimulates kinase activity., Zalewski JK, Mo JH, Heber S, Heroux A, Gardner RG, Hildebrand JD, VanDemark AP, J Biol Chem. 2016 Oct 10. pii: jbc.M116.738559. PMID:27758857

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk] Biological Unit Coordinates (5f5p.pdb1.gz) 149 Kb Biological Unit Coordinates (5f5p.pdb2.gz) 148 Kb LPC: Ligand-Protein Contacts for 5F5P CSU: Contacts of Structural Units for 5F5P Structure Factors (170 Kb) Retrieve 5F5P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F5P from S2C, [Save to disk] Re-refined 5f5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F5P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F5P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f5p_G] [5f5p_C] [5f5p_B] [5f5p_H] [5f5p] [5f5p_D] [5f5p_A] [5f5p_F] [5f5p_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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