5F5R Chaperone date Dec 04, 2015
title Trap1n-Adpnp
authors F.T.F.Tsai, S.Lee, N.Sung, J.Lee, C.Chang, A.Joachimiak
compound source
Molecule: Heat Shock Protein 75 Kda, Mitochondrial
Chain: A, B
Fragment: Unp Residues 60-294
Synonym: Hsp 75,Tnfr-Associated Protein 1,Tumor Necrosis Fa Receptor-Associated Protein,Trap-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trap1, Hsp75
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb12
symmetry Space Group: C 2 2 21
R_factor 0.176 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.570 143.168 103.011 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMitochondrial Hsp90 is a ligand-activated molecular chaperone coupling ATP binding to dimer closure through a coiled-coil intermediate., Sung N, Lee J, Kim JH, Chang C, Joachimiak A, Lee S, Tsai FT, Proc Natl Acad Sci U S A. 2016 Feb 29. pii: 201516167. PMID:26929380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (5f5r.pdb1.gz) 155 Kb
  • Biological Unit Coordinates (5f5r.pdb2.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 5F5R
  • CSU: Contacts of Structural Units for 5F5R
  • Structure Factors (694 Kb)
  • Retrieve 5F5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F5R from S2C, [Save to disk]
  • Re-refined 5f5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5f5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f5r_A] [5f5r_B] [5f5r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5F5R: [HATPase_c ] by SMART
  • Other resources with information on 5F5R
  • Community annotation for 5F5R at PDBWiki (http://pdbwiki.org)

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