OCA Atlas for 5F87

5F87

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, UDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, F, A, B, C, E

Primary reference

Structural analysis of Notch-regulating Rumi reveals basis for pathogenic mutations., Yu H, Takeuchi H, Takeuchi M, Liu Q, Kantharia J, Haltiwanger RS, Li H, Nat Chem Biol. 2016 Sep;12(9):735-40. doi: 10.1038/nchembio.2135. Epub 2016 Jul, 18. PMID:27428513

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]

Biological Unit Coordinates (5f87.pdb1.gz) 64 Kb

Biological Unit Coordinates (5f87.pdb2.gz) 64 Kb

Biological Unit Coordinates (5f87.pdb3.gz) 64 Kb

Biological Unit Coordinates (5f87.pdb4.gz) 65 Kb

Biological Unit Coordinates (5f87.pdb5.gz) 65 Kb

Biological Unit Coordinates (5f87.pdb6.gz) 65 Kb

LPC: Ligand-Protein Contacts for 5F87

CSU: Contacts of Structural Units for 5F87

Structure Factors (818 Kb)

Retrieve 5F87 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5F87 from S2C, [Save to disk]

Re-refined 5f87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F87 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f87] [5f87_A] [5f87_B] [5f87_C] [5f87_D] [5f87_E] [5f87_F]

SWISS-PROT database:

Domain found in 5F87: [CAP10 ] by SMART

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