5F9H	Hydrolase Rna	date	Dec 09, 2015
title	Crystal Structure Of Rig-I Helicase-Rd In Complex With 24-Me Triphosphate Hairpin Rna
authors	C.Wang, J.Marcotrigiano, M.Miller, F.Jiang
compound		source
Molecule: Probable Atp-Dependent Rna Helicase Ddx58 Chain: A, C, E, G, I, K Synonym: Dead Box Protein 58,Rig-I-Like Receptor 1,Rlr-1,Re Acid-Inducible Gene 1 Protein,Rig-1,Retinoic Acid-Inducible Protein,Rig-I; Ec: 3.6.4.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddx58 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'- R(Papapupapupapapupapgpupgpapupapupupapu C)-3'); Chain: B, D, F, H, J, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.214 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.180 174.810 309.280 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	GTP, MG, ZN	enzyme	Hydrolase E.C.3.6.4.13 BRENDA
Gene Ontology	Chain Function Process Component A, C, K, I, G, E
Primary reference	Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I., Devarkar SC, Wang C, Miller MT, Ramanathan A, Jiang F, Khan AG, Patel SS, Marcotrigiano J, Proc Natl Acad Sci U S A. 2016 Jan 5. pii: 201515152. PMID:26733676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (698 Kb) [Save to disk] Biological Unit Coordinates (5f9h.pdb1.gz) 680 Kb LPC: Ligand-Protein Contacts for 5F9H CSU: Contacts of Structural Units for 5F9H Structure Factors (2238 Kb) Retrieve 5F9H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F9H from S2C, [Save to disk] Re-refined 5f9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f9h_D] [5f9h_E] [5f9h_G] [5f9h_A] [5f9h] [5f9h_C] [5f9h_I] [5f9h_B] [5f9h_H] [5f9h_L] [5f9h_F] [5f9h_K] [5f9h_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5F9H: [AAA] [DEXDc] [HELICc ] by SMART

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