5FM1 Cell Cycle date Oct 30, 2015
title Structure Of Gamma-Tubulin Small Complex Based On A Cryo-Em Chemical Cross-Links, And A Remotely Related Structure
authors C.H.Greenberg, J.Kollman, A.Zelter, R.Johnson, M.J.Maccoss, T.N.D D.A.Agard, A.Sali
compound source
Molecule: Spindle Pole Body Component Spc97
Chain: A
Synonym: Gcp2
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdv45

Molecule: Spindle Pole Body Component Spc98
Chain: B
Synonym: Gcp3
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdv45

Molecule: Tubulin Gamma Chain
Chain: C, D
Synonym: Gamma-Tubulin
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdv45

Molecule: Spindle Pole Body Component 110
Chain: E, F
Synonym: Extragenic Suppressor Of Cmd1-1 Mutant Protein 1, Filament-Related Protein 1, Spindle Pole Body Spacer Protei Spc110;
Engineered: Yes
Other_details: Construct Includes The First 220 Residues Of It Cannot Be Uniquely Identified Which Fragment Of Spc110 I In The Map, Thus A Poly-Alanine Helix Was Fitted.

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdv45
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


D, C
  • mitotic spindle organization...

  • Primary referenceStructure of gamma-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure., Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A, J Struct Biol. 2016 Jun;194(3):303-10. doi: 10.1016/j.jsb.2016.03.006. Epub 2016 , Mar 8. PMID:26968363
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2887 Kb) [Save to disk]
  • Biological Unit Coordinates (5fm1.pdb1.gz) 2010 Kb
  • CSU: Contacts of Structural Units for 5FM1
  • Retrieve 5FM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FM1 from S2C, [Save to disk]
  • View 5FM1 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FM1
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fm1] [5fm1_E] [5fm1_D] [5fm1_B] [5fm1_C] [5fm1_A] [5fm1_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FM1: [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 5FM1
  • Community annotation for 5FM1 at PDBWiki (http://pdbwiki.org)

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