5FMV Hydrolase date Nov 09, 2015
title Crystal Structure Of Human Cd45 Extracellular Region, Domain
authors V.T.Chang, R.A.Fernandes, K.A.Ganzinger, S.F.Lee, C.Siebold, J.Mc P.Jonsson, M.Palayret, K.Harlos, C.H.Coles, E.Y.Jones, Y.Lui, E.H R.J.C.Gilbert, D.Klenerman, A.R.Aricescu, S.J.Davis
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase C
Chain: A, B
Fragment: Domains D1-D4, Residues 223-571
Synonym: Leukocyte Common Antigen, L-Ca, T200, Cd45 Extrace Region D1-D4;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: T-Cells
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho-K1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee14
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.550 59.410 100.420 90.00 111.66 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand NAG, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInitiation of T cell signaling by CD45 segregation at 'close contacts'., Chang VT, Fernandes RA, Ganzinger KA, Lee SF, Siebold C, McColl J, Jonsson P, Palayret M, Harlos K, Coles CH, Jones EY, Lui Y, Huang E, Gilbert RJ, Klenerman D, Aricescu AR, Davis SJ, Nat Immunol. 2016 May;17(5):574-82. doi: 10.1038/ni.3392. Epub 2016 Mar 21. PMID:26998761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (5fmv.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (5fmv.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5FMV
  • CSU: Contacts of Structural Units for 5FMV
  • Structure Factors (411 Kb)
  • Retrieve 5FMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FMV from S2C, [Save to disk]
  • Re-refined 5fmv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fmv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fmv_A] [5fmv] [5fmv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FMV: [FN3 ] by SMART
  • Other resources with information on 5FMV
  • Community annotation for 5FMV at PDBWiki (http://pdbwiki.org)

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