5FO8	Lipid Binding	date	Nov 18, 2015
title	Crystal Structure Of Human Complement C3b In Complex With Mc
authors	F.Forneris, J.Wu, X.Xue, P.Gros
compound		source
Molecule: Complement C3 Chain: A Fragment: Unp Residues 23-667 Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1, C3adesarg, Complement C3b; Ec: 3.4.21.47		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purified From Human Plasma
Molecule: Complement C3 Chain: B Fragment: Unp Residues 749-1663 Synonym: C3 And Pzp-Like Alpha-2-Macroglobulin Domain-Conta Protein 1, C3adesarg, Complement C3b; Ec: 3.4.21.47		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purified From Human Plasma
Molecule: Membrane Cofactor Protein Chain: C Fragment: Ccp Domains 1-4, Unp Residues 35-286 Synonym: Tlx, Trophoblast Leukocyte Common Antigen, Membran Protein Mcp, Cd46; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 2 21	R_factor 0.188 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.830 130.630 233.830 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	BMA, EDO, NAG	enzyme	Hydrolase E.C.3.4.21.47 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Regulators of complement activity mediate inhibitory mechanisms through a common C3b-binding mode., Forneris F, Wu J, Xue X, Ricklin D, Lin Z, Sfyroera G, Tzekou A, Volokhina E, Granneman JC, Hauhart R, Bertram P, Liszewski MK, Atkinson JP, Lambris JD, Gros P, EMBO J. 2016 Mar 24. pii: e201593673. PMID:27013439

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (555 Kb) [Save to disk] Biological Unit Coordinates (5fo8.pdb1.gz) 544 Kb LPC: Ligand-Protein Contacts for 5FO8 CSU: Contacts of Structural Units for 5FO8 Structure Factors (1706 Kb) Retrieve 5FO8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FO8 from S2C, [Save to disk] Re-refined 5fo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FO8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FO8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fo8] [5fo8_C] [5fo8_B] [5fo8_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5FO8: [A2M] [A2M_N_2] [A2M_recep] [C345C] [CCP] [Thiol-ester_cl ] by SMART

Other resources with information on 5FO8

Community annotation for 5FO8 at PDBWiki (http://pdbwiki.org)

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