5FYR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, INS, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, A, B, C


Primary referenceThe structure of a calcium-dependent phosphoinositide-specific phospholipase C from Pseudomonas sp. 62186, the first from a Gram-negative bacterium., Moroz OV, Blagova E, Lebedev AA, Norgaard A, Segura DR, Blicher TH, Brask J, Wilson KS, Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):32-44. doi:, 10.1107/S2059798316019616. Epub 2017 Jan 1. PMID:28045383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (414 Kb) [Save to disk]
  • Biological Unit Coordinates (5fyr.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (5fyr.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (5fyr.pdb3.gz) 105 Kb
  • Biological Unit Coordinates (5fyr.pdb4.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 5FYR
  • CSU: Contacts of Structural Units for 5FYR
  • Structure Factors (9950 Kb)
  • Retrieve 5FYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FYR from S2C, [Save to disk]
  • Re-refined 5fyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fyr] [5fyr_A] [5fyr_B] [5fyr_C] [5fyr_D]
  • SWISS-PROT database:

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