5GG4	Hydrolase Ligase	date	Jun 15, 2016
title	Crystal Structure Of Usp7 With Rnf169 Peptide
authors	Y.Jiang, Q.Gong
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7 Chain: A, B, C, D Fragment: Unp Residues 560-890 Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7; Ec: 3.4.19.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp7, Hausp Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 Expression_system_strain: Bl21-Gold(De3)Plyss Ag Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28asumo
Molecule: Peptide From E3 Ubiquitin-Protein Ligase Rnf169 Chain: E, F, G, H Synonym: Ring Finger Protein 169 Ec: 6.3.2.- Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.226 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.195 99.965 124.299 90.00 95.54 90.00
method	X-Ray Diffraction	resolution	3.11 Å
ligand		enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Primary reference	Dual-utility NLS drives RNF169-dependent DNA damage responses., An L, Jiang Y, Ng HH, Man EP, Chen J, Khoo US, Gong Q, Huen MS, Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2872-E2881. doi:, 10.1073/pnas.1616602114. Epub 2017 Mar 21. PMID:28325877

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (5gg4.pdb1.gz) 101 Kb Biological Unit Coordinates (5gg4.pdb2.gz) 75 Kb CSU: Contacts of Structural Units for 5GG4 Structure Factors (737 Kb) Retrieve 5GG4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GG4 from S2C, [Save to disk] Re-refined 5gg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gg4] [5gg4_D] [5gg4_F] [5gg4_A] [5gg4_H] [5gg4_B] [5gg4_C] [5gg4_G] [5gg4_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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