5GIP	Transferase Rna	date	Jun 24, 2016
title	Crystal Structure Of Box Cd Rnp With 13 Nt Guide Regions An Substrates
authors	Z.Yang, J.Lin, K.Ye
compound		source
Molecule: Cd Box Methylation Guide Ribonucleoprotein Compl Subunit; Chain: A, B, K, L Fragment: Unp Residues 3-379 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Sula_1947, Sulb_1948, Sulc_1946 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 50s Ribosomal Protein L7ae Chain: C, D, M, N Fragment: Unp Residues 3-127 Synonym: Ribosomal Protein L8e Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Rpl7ae, Sula_1106, Sulb_1107, Sulc_1105 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fibrillarin-Like Rrnatrna 2'-O-Methyltransferase Chain: E, F, O, P Fragment: Unp Residues 3-232 Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Flpa, Ssop1_0970, Sula_1948, Sulb_1949, Sulc_1947 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cd Rna Chain: G, H, Q, R Engineered: Yes		Synthetic: Yes Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287
Molecule: Substrate Chain: I, J, S, T Engineered: Yes		Synthetic: Yes Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287
symmetry	Space Group: P 1	R_factor 0.178 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.916 97.718 128.793 108.98 104.42 89.86
method	X-Ray Diffraction	resolution	3.13 Å
ligand	SAH	enzyme	Transferase E.C.2.1.1 BRENDA
Gene	SSOP1 ; SULA ; SULA ; SULA ; SULB ; SULB ; SULB ; SULC ; SULC ; SULC
Gene Ontology	Chain Function Process Component A, K, B, L F, O, P, E N, M, C, D ribonuclease P activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk] Biological Unit Coordinates (5gip.pdb1.gz) 267 Kb Biological Unit Coordinates (5gip.pdb2.gz) 266 Kb LPC: Ligand-Protein Contacts for 5GIP CSU: Contacts of Structural Units for 5GIP Structure Factors (1623 Kb) Retrieve 5GIP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GIP from S2C, [Save to disk] Re-refined 5gip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GIP in 3D

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Visual 3D analysis of 5GIP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gip_P] [5gip_B] [5gip_F] [5gip_S] [5gip_H] [5gip_M] [5gip_D] [5gip_C] [5gip_J] [5gip_L] [5gip_R] [5gip_O] [5gip_N] [5gip_I] [5gip_K] [5gip_A] [5gip_G] [5gip_T] [5gip_E] [5gip_Q] [5gip] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5GIP: [Fibrillarin] [NOSIC ] by SMART

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