5GLF	Hydrolase Transport Protein	date	Jul 11, 2016
title	Structural Insights Into The Interaction Of P97 N-Terminal D Shp Motif In Derlin-1 Rhomboid Pseudoprotease
authors	J.J.Lim, Y.Lee, S.Y.Yoon, T.T.Ly, J.Y.Kang, H.S.Youn, J.Y.An, J.G K.R.Park, T.G.Kim, J.K.Yang, Y.Jun, S.H.Eom
compound		source
Molecule: Transitional Endoplasmic Reticulum Atpase Chain: A, C, E, G Fragment: P97 N-Terminal Domain (Unp Residues 21-199) Synonym: Ter Atpase,15s Mg(2+)-Atpase P97 Subunit,Valosin-C Protein,Vcp; Ec: 3.6.4.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcp Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Derlin-1 Chain: B, D, F, H Fragment: Shp Box (Unp Residues 239-250) Synonym: Degradation In Endoplasmic Reticulum Protein 1,Der Der1-Like Protein 1; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.802 74.402 222.114 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand		enzyme	Hydrolase E.C.3.6.4.6 BRENDA
Primary reference	Structural insights into the interaction of human p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease., Lim JJ, Lee Y, Yoon SY, Ly TT, Kang JY, Youn HS, An JY, Lee JG, Park KR, Kim TG, Yang JK, Jun Y, Eom SH, FEBS Lett. 2016 Oct 7. doi: 10.1002/1873-3468.12447. PMID:27714797

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (5glf.pdb1.gz) 34 Kb Biological Unit Coordinates (5glf.pdb2.gz) 34 Kb Biological Unit Coordinates (5glf.pdb3.gz) 32 Kb Biological Unit Coordinates (5glf.pdb4.gz) 32 Kb CSU: Contacts of Structural Units for 5GLF Structure Factors (635 Kb) Retrieve 5GLF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GLF from S2C, [Save to disk] Re-refined 5glf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GLF in 3D

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Visual 3D analysis of 5GLF

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5glf_E] [5glf_G] [5glf] [5glf_B] [5glf_D] [5glf_H] [5glf_A] [5glf_F] [5glf_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5GLF: [CDC48_2] [CDC48_N ] by SMART

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