5GO4 Hydrolase date Jul 26, 2016
title Truncated Mitofusin-1, Nucleotide-Free
authors Y.L.Cao, S.Gao
compound source
Molecule: Mitofusin-1
Chain: A
Fragment: Unp Residues 1-365,Unp Residues 696-741
Synonym: Fzo Homolog,Transmembrane Gtpase Mfn1,Fzo Homolog, Transmembrane Gtpase Mfn1;
Ec: 3.6.5.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mfn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.799 110.876 112.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.6.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMFN1 structures reveal nucleotide-triggered dimerization critical for mitochondrial fusion., Cao YL, Meng S, Chen Y, Feng JX, Gu DD, Yu B, Li YJ, Yang JY, Liao S, Chan DC, Gao S, Nature. 2017 Feb 16;542(7641):372-376. doi: 10.1038/nature21077. Epub 2017 Jan, 23. PMID:28114303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5go4.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 5GO4
  • Structure Factors (663 Kb)
  • Retrieve 5GO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GO4 from S2C, [Save to disk]
  • Re-refined 5go4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GO4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5go4_A] [5go4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GO4
  • Community annotation for 5GO4 at PDBWiki (http://pdbwiki.org)

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