5GR8	Transferase	date	Aug 08, 2016
title	Crystal Structure Of Pepr1-Atpep1
authors	J.J.Chai, J.Tang
compound		source
Molecule: Leucine-Rich Repeat Receptor-Like Protein Kinase Chain: A, D Fragment: Unp Residues 29-738 Synonym: Pepr1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Pepr1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Elicitor Peptide 1 Chain: J, P Synonym: Atpep1 Engineered: Yes		Synthetic: Yes Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702
symmetry	Space Group: P 1 21 1	R_factor 0.235 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.490 96.967 106.013 90.00 110.79 90.00
method	X-Ray Diffraction	resolution	2.59 Å
ligand	NAG, SO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
Primary reference	Structural basis for recognition of an endogenous peptide by the plant receptor kinase PEPR1., Tang J, Han Z, Sun Y, Zhang H, Gong X, Chai J, Cell Res. 2015 Jan;25(1):110-20. doi: 10.1038/cr.2014.161. Epub 2014 Dec 5. PMID:25475059

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (5gr8.pdb1.gz) 114 Kb Biological Unit Coordinates (5gr8.pdb2.gz) 113 Kb LPC: Ligand-Protein Contacts for 5GR8 CSU: Contacts of Structural Units for 5GR8 Structure Factors (711 Kb) Retrieve 5GR8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GR8 from S2C, [Save to disk] Re-refined 5gr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GR8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GR8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gr8_D] [5gr8_A] [5gr8] [5gr8_P] [5gr8_J] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5GR8

Community annotation for 5GR8 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---