5GVR	Hydrolase	date	Sep 06, 2016
title	Crystal Structure Of The Ddx41 Dead Domain In An Apo Closed
authors	H.Omura, D.Oikawa, T.Nakane, M.Kato, R.Ishii, Y.Goto, H.Suga, R.Ish F.Tokunaga, O.Nureki
compound		source
Molecule: Probable Atp-Dependent Rna Helicase Ddx41 Chain: A Fragment: Unp Residues 169-402 Synonym: Dead Box Protein 41,Dead Box Protein Abstrakt Homo Ec: 3.6.4.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddx41, Abs Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 32 2 1	R_factor 0.181 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.830 81.830 69.570 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	LMR	enzyme	Hydrolase E.C.3.6.4.13 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide., Omura H, Oikawa D, Nakane T, Kato M, Ishii R, Ishitani R, Tokunaga F, Nureki O, Sci Rep. 2016 Oct 10;6:34756. doi: 10.1038/srep34756. PMID:27721487

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (5gvr.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 5GVR CSU: Contacts of Structural Units for 5GVR Structure Factors (942 Kb) Retrieve 5GVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GVR from S2C, [Save to disk] Re-refined 5gvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gvr] [5gvr_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5GVR: [DEXDc ] by SMART

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