5GW0 Protein Transport date Sep 08, 2016
title Crystal Structure Of Snx16 Px-Coiled Coil
authors J.Xu, J.Liu
compound source
Molecule: Sorting Nexin-16
Chain: A, B, C, D, E, F
Fragment: Unp Residues 100-278
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snx16
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.236 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.380 196.780 72.960 90.00 111.75 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceSNX16 Regulates the Recycling of E-Cadherin through a Unique Mechanism of Coordinated Membrane and Cargo Binding., Xu J, Zhang L, Ye Y, Shan Y, Wan C, Wang J, Pei D, Shu X, Liu J, Structure. 2017 Aug 1;25(8):1251-1263.e5. doi: 10.1016/j.str.2017.06.015. Epub, 2017 Jul 14. PMID:28712807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (5gw0.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (5gw0.pdb2.gz) 123 Kb
  • Biological Unit Coordinates (5gw0.pdb3.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 5GW0
  • CSU: Contacts of Structural Units for 5GW0
  • Structure Factors (1808 Kb)
  • Retrieve 5GW0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GW0 from S2C, [Save to disk]
  • View 5GW0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GW0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gw0_C] [5gw0_B] [5gw0_A] [5gw0_E] [5gw0_F] [5gw0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GW0
  • Community annotation for 5GW0 at PDBWiki (http://pdbwiki.org)

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