5GYK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PEE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, C, D, B


Primary referenceCrystal structure of Mdm12 reveals the architecture and dynamic organization of the ERMES complex., Jeong H, Park J, Lee C, EMBO Rep. 2016 Dec;17(12):1857-1871. Epub 2016 Nov 7. PMID:27821511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk]
  • Biological Unit Coordinates (5gyk.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (5gyk.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (5gyk.pdb3.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 5GYK
  • CSU: Contacts of Structural Units for 5GYK
  • Structure Factors (275 Kb)
  • Retrieve 5GYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GYK from S2C, [Save to disk]
  • Re-refined 5gyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gyk] [5gyk_A] [5gyk_B] [5gyk_C] [5gyk_D] [5gyk_E] [5gyk_F]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science